Give every shipment a place in the order record
A partially shipped order needs a schedule showing what was ordered, what left the warehouse and what remains. Add capture references alongside the shipment references. This allows finance to distinguish an unshipped balance from a shipment whose payment was missed. Keep the order total intact while showing its components; creating a new full order for every box can inflate sales and customer demand.
Shopify documents several capture methods and limits automatic capture per fulfillment to its Plus plan. Payment methods and providers can behave differently. Confirm the actual configuration before expecting every dispatch to trigger a matching collection. A store setting, fulfillment app and processor must be assessed together when the team designs this control.
References: Shopify: Payment authorization and capture
Allocate the amount using the commercial terms
Decide how item discounts, delivery charges and other order amounts belong to each release. Use the agreed order calculation and the platform's supported allocation, then check the total. A shipment representing half the units may carry a very different share of the order value when the products have different prices. Keep any rounding difference attached to the final release.
Suppose a hypothetical order contains a $120 item and an $80 item, with $10 delivery and no other amounts. If the approved method assigns the delivery charge to the first shipment, the planned captures are $130 and $80, totaling $210. This is an illustration of one allocation, not a universal capture rule. The accountant must separately assess when the related revenue and product cost belong in the books.
Record changes to the allocation when a backordered item is canceled or substituted. Otherwise, the team can capture the original final balance after agreeing to a cheaper replacement. Link that change to the customer's approval.
Finish with the residual amount and quantity
At order completion, total successful captures less completed refunds and compare that amount with the final commercial order. Reconcile shipped, canceled and still-open quantities separately. A zero customer balance can coexist with an unshipped item, and a fully shipped order can retain an unpaid balance. Both exceptions require a decision before the order is treated as finished.
Match the captures to settlement detail only after the order schedule agrees. Several captures can arrive in different payouts, and a payout can include many unrelated orders. Preserve the individual references through the accounting import. At month end, provide the reviewer with unfinished split orders and their next expected event, particularly where shipment, capture and bank receipt fall in different periods.
Sources
Requirements and product details can change. Check the linked guidance for the facts that apply to your situation.
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General information, not personalized accounting, tax, legal, or investment advice. Have the appropriate qualified professional review decisions that depend on your circumstances.